FlexSemFlexSemAarhus University department of Ecoscience

 

Acknowledgement
Users of FlexSem are requested to include proper references and acknowledge Department of Ecoscience, Aarhus University, Denmark in any publications resulting from use of FlexSem. In peer-reviewed publications, please cite

A versatile marine modelling tool applied to arctic, temperate and tropical waters. Larsen J, Mohn C, Pastor A, Maar M (2020) A versatile marine modelling tool applied to arctic, temperate and tropical waters. PLOS ONE 15(4): e0231193. https://doi.org/10.1371/journal.pone.0231193
Precompiled
Windows only.
Install NetCDF 4.0 or newer.
Unzip the program and call FlexSem.exe with a setup file (*.xml) as input from the command promt to run a simulation.
On older windows systems, you need to have Microsoft Visual C++ Redistributable Package installed.
  • FlexSem precompiled for windows (parallelized) (updated 15. maj 2025)
    		•
    Source code

    Please notice that FlexSem uses NetCdf (https://www.unidata.ucar.edu/software/netcdf/) and TinyXML (http://sourceforge.net/projects/tinyxml/). In order to compile FlexSem you need to download and link to them.

    FlexSem compiles on Windows with vc++
  • Source code (updated 23. april 2025)
    		•
    Python

    pyFlexSem is a python ctypes wrapper to interface with the native binary FlexSem format.

  • pyFlexSem.zip (updated 15. maj 2025)
    • R package

    A R package to interface with the binary output files. NB: This interface has been replaced by the Python interface and will no longer be updated.

  • FlexSemTools_4.0.0.zip (updated 15. september 2023)
    • License

    FlexSem is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

    FlexSem is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

    http://www.gnu.org/copyleft/gpl.html